Variant report

Variant	rs72779415
Chromosome Location	chr5:94405985-94405986
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10515221	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55698765	0.98[EUR][1000 genomes]
rs56005052	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56059837	0.85[AMR][1000 genomes]
rs56180405	0.93[AMR][1000 genomes]
rs56284969	0.82[EUR][1000 genomes]
rs56388311	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66648054	0.85[EUR][1000 genomes]
rs67002726	0.88[EUR][1000 genomes]
rs72777386	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72777395	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72779405	0.88[EUR][1000 genomes]
rs72779413	1.00[EUR][1000 genomes]
rs72779419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72779421	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72779422	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72779432	0.90[EUR][1000 genomes]
rs72779439	0.82[EUR][1000 genomes]
rs72779444	0.93[AMR][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94399800-94411400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr5:94403400-94408000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:94403800-94406400	Enhancers	Primary hematopoietic stem cells	blood
4	chr5:94404000-94407000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr5:94404000-94407600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr5:94404200-94406800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:94404400-94407000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:94404600-94416200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:94404800-94412200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:94404800-94414600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:94405000-94407000	Enhancers	Adipose Nuclei	Adipose
12	chr5:94405600-94406200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr5:94405600-94406600	Enhancers	Dnd41	blood
14	chr5:94405600-94406800	Enhancers	Fetal Thymus	thymus
15	chr5:94405600-94407000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr5:94405600-94407000	Genic enhancers	HUVEC	blood vessel
17	chr5:94405800-94406000	Enhancers	Gastric	stomach
18	chr5:94405800-94406000	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr5:94405800-94406000	Flanking Active TSS	GM12878-XiMat	blood
20	chr5:94405800-94406200	Flanking Active TSS	Brain Anterior Caudate	brain
21	chr5:94405800-94406200	Enhancers	Fetal Muscle Trunk	muscle
22	chr5:94405800-94406400	Enhancers	Brain Cingulate Gyrus	brain
23	chr5:94405800-94406400	Enhancers	Brain Hippocampus Middle	brain
24	chr5:94405800-94406400	Enhancers	Duodenum Mucosa	Duodenum
25	chr5:94405800-94406600	Enhancers	Primary T cells from cord blood	blood
26	chr5:94405800-94406600	Enhancers	Colonic Mucosa	Colon
27	chr5:94405800-94406600	Enhancers	Fetal Stomach	stomach
28	chr5:94405800-94407000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr5:94405800-94407000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr5:94405800-94407000	Enhancers	Primary B cells from cord blood	blood
31	chr5:94405800-94407000	Enhancers	Placenta	Placenta
32	chr5:94405800-94407000	Enhancers	Left Ventricle	heart
33	chr5:94405800-94407000	Genic enhancers	Lung	lung
34	chr5:94405800-94407000	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr5:94405800-94407000	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr5:94405800-94407000	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr5:94405800-94407000	Enhancers	Stomach Mucosa	stomach
38	chr5:94405800-94407000	Enhancers	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links