Variant report

Variant	rs67002726
Chromosome Location	chr5:94366450-94366451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10515221	0.86[EUR][1000 genomes]
rs309805	0.86[EUR][1000 genomes]
rs309807	0.86[EUR][1000 genomes]
rs55698765	0.90[EUR][1000 genomes]
rs62364704	0.82[AFR][1000 genomes]
rs66648054	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72777375	0.88[EUR][1000 genomes]
rs72777377	0.88[EUR][1000 genomes]
rs72777380	0.88[EUR][1000 genomes]
rs72777386	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72777395	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72779405	0.96[EUR][1000 genomes]
rs72779413	0.88[EUR][1000 genomes]
rs72779415	0.88[EUR][1000 genomes]
rs72779419	0.88[EUR][1000 genomes]
rs72779421	0.88[EUR][1000 genomes]
rs72779422	0.86[EUR][1000 genomes]
rs73138067	0.82[AFR][1000 genomes]
rs7708977	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94349000-94377800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:94362800-94369600	Enhancers	HUVEC	blood vessel
3	chr5:94363800-94367000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr5:94363800-94367200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:94363800-94367200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr5:94364200-94371000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr5:94366200-94367200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:94366400-94368600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr5:94366400-94369000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:94366400-94371800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr5:94366400-94374200	Weak transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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