Variant report

Variant	rs72779405
Chromosome Location	chr5:94389928-94389929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10515221	0.86[EUR][1000 genomes]
rs309805	0.82[EUR][1000 genomes]
rs309807	0.82[EUR][1000 genomes]
rs55698765	0.90[EUR][1000 genomes]
rs66648054	0.92[EUR][1000 genomes]
rs67002726	0.96[EUR][1000 genomes]
rs72777375	0.84[EUR][1000 genomes]
rs72777377	0.84[EUR][1000 genomes]
rs72777380	0.84[EUR][1000 genomes]
rs72777386	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72777395	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72779413	0.88[EUR][1000 genomes]
rs72779415	0.88[EUR][1000 genomes]
rs72779419	0.88[EUR][1000 genomes]
rs72779421	0.88[EUR][1000 genomes]
rs72779422	0.86[EUR][1000 genomes]
rs7708977	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94376200-94405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94385000-94393200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:94385000-94398200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:94385200-94395400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:94385400-94393200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:94385600-94404200	Weak transcription	HUVEC	blood vessel
7	chr5:94386600-94395000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:94386800-94393200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr5:94387600-94395200	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr5:94388400-94393400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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