Variant report

Variant	rs7708977
Chromosome Location	chr5:94351572-94351573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs309805	0.98[EUR][1000 genomes]
rs309807	0.98[EUR][1000 genomes]
rs66648054	0.84[EUR][1000 genomes]
rs67002726	0.88[EUR][1000 genomes]
rs72777375	1.00[EUR][1000 genomes]
rs72777377	1.00[EUR][1000 genomes]
rs72777380	1.00[EUR][1000 genomes]
rs72777386	0.88[EUR][1000 genomes]
rs72777395	0.88[EUR][1000 genomes]
rs72779405	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94334800-94353400	Weak transcription	Gastric	stomach
2	chr5:94334800-94358200	Weak transcription	Stomach Mucosa	stomach
3	chr5:94340800-94352200	Weak transcription	Lung	lung
4	chr5:94340800-94362800	Weak transcription	Thymus	Thymus
5	chr5:94340800-94363000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:94344200-94363400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr5:94344400-94352200	Weak transcription	Primary B cells from cord blood	blood
8	chr5:94345800-94353200	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr5:94346400-94353200	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr5:94348000-94352200	Weak transcription	Adipose Nuclei	Adipose
11	chr5:94348400-94358000	Weak transcription	Dnd41	blood
12	chr5:94348800-94354800	Weak transcription	GM12878-XiMat	blood
13	chr5:94349000-94363000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr5:94349000-94377800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:94349200-94353200	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr5:94349600-94353200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:94349800-94351800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr5:94349800-94355800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr5:94350000-94352200	Weak transcription	Fetal Thymus	thymus
20	chr5:94350000-94353000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:94350000-94353200	Strong transcription	Primary hematopoietic stem cells	blood
22	chr5:94350200-94358200	Weak transcription	Primary T cells from cord blood	blood
23	chr5:94350600-94358800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr5:94350800-94351800	Weak transcription	HUVEC	blood vessel
25	chr5:94350800-94352400	Weak transcription	HMEC	breast
26	chr5:94351400-94353200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr5:94351400-94353800	Weak transcription	Brain Angular Gyrus	brain

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