Variant report

Variant	rs72779421
Chromosome Location	chr5:94409126-94409127
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10515221	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55698765	0.98[EUR][1000 genomes]
rs56005052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56180405	0.81[AMR][1000 genomes]
rs56284969	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56388311	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66648054	0.85[EUR][1000 genomes]
rs67002726	0.88[EUR][1000 genomes]
rs72777386	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72777395	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72779405	0.88[EUR][1000 genomes]
rs72779413	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72779415	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72779419	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72779422	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72779432	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72779439	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72779444	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964783	chr5:94407585-94410395	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94399800-94411400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr5:94404600-94416200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:94404800-94412200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:94404800-94414600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:94406000-94409200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr5:94406600-94412000	Weak transcription	Brain Anterior Caudate	brain
7	chr5:94406600-94413600	Weak transcription	Dnd41	blood
8	chr5:94406600-94415800	Weak transcription	Fetal Stomach	stomach
9	chr5:94406800-94410000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr5:94406800-94410600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr5:94407000-94410600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:94407000-94412200	Weak transcription	Adipose Nuclei	Adipose
13	chr5:94407000-94417200	Weak transcription	Gastric	stomach
14	chr5:94407000-94423600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr5:94407600-94410400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr5:94407600-94415600	Weak transcription	Primary B cells from cord blood	blood
17	chr5:94408000-94409200	Genic enhancers	HUVEC	blood vessel
18	chr5:94408000-94410400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr5:94408000-94411600	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr5:94408200-94410400	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr5:94408800-94409400	Flanking Active TSS	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links