Variant report

Variant	rs56180405
Chromosome Location	chr5:94449673-94449674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56005052	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56059837	0.92[AMR][1000 genomes]
rs56284969	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56388311	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72777386	0.85[AMR][1000 genomes]
rs72777395	0.85[AMR][1000 genomes]
rs72779415	0.93[AMR][1000 genomes]
rs72779419	0.93[AMR][1000 genomes]
rs72779421	0.81[AMR][1000 genomes]
rs72779422	0.86[AMR][1000 genomes]
rs72779432	0.86[AMR][1000 genomes]
rs72779439	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72779444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830407	chr5:94447530-94495329	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94448600-94450400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:94448800-94449800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:94448800-94449800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr5:94448800-94449800	Enhancers	HSMM	muscle
5	chr5:94448800-94449800	Enhancers	HSMMtube	muscle
6	chr5:94448800-94449800	Enhancers	NH-A	brain
7	chr5:94448800-94450000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:94448800-94450200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:94449000-94449800	Enhancers	Fetal Intestine Large	intestine
10	chr5:94449000-94449800	Enhancers	Stomach Mucosa	stomach
11	chr5:94449000-94450600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:94449200-94450000	Enhancers	Osteobl	bone
13	chr5:94449600-94449800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links