Variant report

Variant	rs62366314
Chromosome Location	chr5:57591195-57591196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57589779..57592540-chr5:57753522..57755652,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10066874	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11742503	0.84[EUR][1000 genomes]
rs4700263	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4700272	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4700274	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6871438	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9292155	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9292156	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9885055	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57590000-57591400	Enhancers	HMEC	breast
2	chr5:57590000-57591600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:57590200-57591400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:57590200-57591400	Enhancers	NHEK	skin
5	chr5:57590200-57591600	Enhancers	HUVEC	blood vessel
6	chr5:57590400-57591200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr5:57590400-57591200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:57590400-57591200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:57590400-57591200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr5:57590400-57591400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:57590400-57591400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr5:57590400-57592000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:57590400-57592200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr5:57590600-57591200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr5:57590600-57591200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr5:57590600-57591200	Enhancers	Esophagus	oesophagus
17	chr5:57590600-57591400	Enhancers	Osteobl	bone
18	chr5:57590600-57592200	Enhancers	Primary hematopoietic stem cells	blood
19	chr5:57590600-57592200	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr5:57590800-57591200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr5:57590800-57597800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links