Variant report

Variant	rs9292156
Chromosome Location	chr5:57537229-57537230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57537158..57537698-chr6:93136804..93137665,2	MCF-7	breast:
2	chr5:57535441..57538302-chr5:57538781..57541164,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10066874	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10066944	0.83[JPT][hapmap]
rs10068496	0.89[JPT][hapmap]
rs11742503	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16887976	0.84[JPT][hapmap]
rs2112901	0.84[JPT][hapmap]
rs2194196	0.81[JPT][hapmap]
rs4700263	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4700264	0.84[JPT][hapmap]
rs4700265	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs4700272	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4700274	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62366314	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6871438	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6887808	0.84[JPT][hapmap]
rs6889264	0.84[JPT][hapmap]
rs9292155	0.90[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.80[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9885055	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57526200-57544000	Weak transcription	Aorta	Aorta
2	chr5:57534400-57538000	Enhancers	Hela-S3	cervix
3	chr5:57534800-57555200	Weak transcription	Left Ventricle	heart
4	chr5:57535400-57537800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:57535400-57540600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:57535400-57540800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr5:57535600-57537600	Enhancers	HMEC	breast
8	chr5:57535600-57538000	Enhancers	NH-A	brain
9	chr5:57535800-57537400	Enhancers	NHDF-Ad	bronchial
10	chr5:57535800-57537600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:57535800-57538000	Enhancers	NHEK	skin
12	chr5:57536000-57537400	Enhancers	Osteobl	bone
13	chr5:57536000-57540400	Weak transcription	Psoas Muscle	Psoas
14	chr5:57536200-57541400	Weak transcription	Right Atrium	heart
15	chr5:57536200-57542200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr5:57536400-57540800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr5:57536600-57544200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr5:57536800-57537800	Enhancers	A549	lung
19	chr5:57536800-57542200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr5:57537200-57537400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr5:57537200-57537400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr5:57537200-57537400	Enhancers	HSMM	muscle
23	chr5:57537200-57537400	Flanking Active TSS	HUVEC	blood vessel
24	chr5:57537200-57537600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr5:57537200-57537600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr5:57537200-57537600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr5:57537200-57537600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr5:57537200-57537600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr5:57537200-57537600	Enhancers	NHLF	lung
30	chr5:57537200-57537800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr5:57537200-57537800	Weak transcription	Adipose Nuclei	Adipose
32	chr5:57537200-57537800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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