Variant report

Variant	rs4700265
Chromosome Location	chr5:57535405-57535406
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57533424..57535901-chr5:57754977..57757820,3	MCF-7	breast:
2	chr5:57534680..57537180-chr5:57754656..57757715,3	MCF-7	breast:
3	chr5:57391538..57393467-chr5:57534896..57536534,2	MCF-7	breast:
4	chr5:57534237..57536303-chr5:57746058..57748624,2	MCF-7	breast:
5	chr5:57529817..57531823-chr5:57533642..57536408,2	K562	blood:
6	chr5:57444209..57446462-chr5:57534291..57536169,2	K562	blood:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10036626	0.81[EUR][1000 genomes]
rs10037463	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10039548	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10040715	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10053213	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10066944	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10068496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10069778	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10069996	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10077937	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10472038	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10472043	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10472046	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12332617	0.89[EUR][1000 genomes]
rs12655438	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16887971	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16887976	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2112901	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2194192	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2194196	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2409009	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28525674	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28532131	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4700263	0.89[YRI][hapmap]
rs4700264	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4700270	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55718490	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59448948	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62366313	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62366742	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62366744	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6874208	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6887808	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6889264	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7706339	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9292155	0.80[YRI][hapmap]
rs9784640	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9885152	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9885514	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57521800-57535600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:57526200-57535600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:57526200-57535600	Weak transcription	Psoas Muscle	Psoas
4	chr5:57526200-57544000	Weak transcription	Aorta	Aorta
5	chr5:57527200-57535600	Weak transcription	HMEC	breast
6	chr5:57527400-57535800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:57531400-57535800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:57531600-57535800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:57531600-57535800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:57531600-57535800	Weak transcription	NHDF-Ad	bronchial
11	chr5:57531600-57536000	Weak transcription	Osteobl	bone
12	chr5:57532000-57535600	Enhancers	A549	lung
13	chr5:57534200-57536400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr5:57534400-57536400	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr5:57534400-57538000	Enhancers	Hela-S3	cervix
16	chr5:57534800-57555200	Weak transcription	Left Ventricle	heart
17	chr5:57535000-57537200	Enhancers	HUVEC	blood vessel
18	chr5:57535400-57535800	Enhancers	Primary B cells from peripheral blood	blood
19	chr5:57535400-57536200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr5:57535400-57536600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr5:57535400-57537800	Enhancers	Muscle Satellite Cultured Cells	--
22	chr5:57535400-57540600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:57535400-57540800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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