Variant report

Variant	rs10472038
Chromosome Location	chr5:57505384-57505385
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57503850..57506829-chr5:57754542..57757314,3	MCF-7	breast:
2	chr5:57504705..57506362-chr5:57749048..57751694,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10037463	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10039548	0.87[EUR][1000 genomes]
rs10040715	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10053213	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10066944	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10068496	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10069778	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10069996	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10077937	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10472043	0.87[EUR][1000 genomes]
rs10472046	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12655438	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16887971	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16887976	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2112901	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2194192	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2194196	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2409009	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28525674	0.87[EUR][1000 genomes]
rs28532131	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4700264	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4700265	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4700270	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55718490	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59448948	0.84[EUR][1000 genomes]
rs62366313	0.84[EUR][1000 genomes]
rs62366742	0.87[EUR][1000 genomes]
rs62366744	0.84[EUR][1000 genomes]
rs6874208	0.84[EUR][1000 genomes]
rs6887808	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6889264	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7706339	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9784640	0.87[EUR][1000 genomes]
rs9885152	0.84[EUR][1000 genomes]
rs9885514	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57498400-57505400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:57504800-57505600	Weak transcription	A549	lung

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