Variant report

Variant	rs62366313
Chromosome Location	chr5:57590808-57590809
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57589779..57592540-chr5:57753522..57755652,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10036626	0.84[EUR][1000 genomes]
rs10037463	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10039548	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10040715	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10053213	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10066944	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10068496	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10069778	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10069996	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10077937	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10472038	0.84[EUR][1000 genomes]
rs10472043	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10472046	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12332617	0.92[EUR][1000 genomes]
rs12655438	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16887971	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16887976	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2112901	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2194192	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2194196	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2409009	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28525674	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28532131	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4700264	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4700265	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4700270	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55718490	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59448948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62366742	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62366744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6874208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6887808	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6889264	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7706339	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9784640	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9885152	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9885514	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57590000-57591400	Enhancers	HMEC	breast
2	chr5:57590000-57591600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:57590200-57591400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:57590200-57591400	Enhancers	NHEK	skin
5	chr5:57590200-57591600	Enhancers	HUVEC	blood vessel
6	chr5:57590400-57591000	Enhancers	HSMM	muscle
7	chr5:57590400-57591000	Enhancers	NHDF-Ad	bronchial
8	chr5:57590400-57591200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr5:57590400-57591200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:57590400-57591200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:57590400-57591200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr5:57590400-57591400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:57590400-57591400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr5:57590400-57592000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:57590400-57592200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr5:57590600-57591000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr5:57590600-57591000	Enhancers	A549	lung
18	chr5:57590600-57591200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr5:57590600-57591200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr5:57590600-57591200	Enhancers	Esophagus	oesophagus
21	chr5:57590600-57591400	Enhancers	Osteobl	bone
22	chr5:57590600-57592200	Enhancers	Primary hematopoietic stem cells	blood
23	chr5:57590600-57592200	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr5:57590800-57591200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr5:57590800-57597800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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