Variant report

Variant	rs12332617
Chromosome Location	chr5:57572555-57572556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10036626	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10037463	0.92[EUR][1000 genomes]
rs10039548	0.89[EUR][1000 genomes]
rs10040715	0.92[EUR][1000 genomes]
rs10051678	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10053213	0.89[EUR][1000 genomes]
rs10057568	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10066944	0.89[EUR][1000 genomes]
rs10068496	0.89[EUR][1000 genomes]
rs10069778	0.89[EUR][1000 genomes]
rs10069996	0.89[EUR][1000 genomes]
rs10077937	0.92[EUR][1000 genomes]
rs10472043	0.89[EUR][1000 genomes]
rs10472046	0.92[EUR][1000 genomes]
rs12655438	0.92[EUR][1000 genomes]
rs16887971	0.89[EUR][1000 genomes]
rs16887976	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs2112901	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs2194192	0.89[EUR][1000 genomes]
rs2194196	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs2409009	0.89[EUR][1000 genomes]
rs28525674	0.89[EUR][1000 genomes]
rs28532131	0.89[EUR][1000 genomes]
rs4700264	0.89[EUR][1000 genomes]
rs4700265	0.89[EUR][1000 genomes]
rs4700270	0.92[EUR][1000 genomes]
rs55718490	0.89[EUR][1000 genomes]
rs59448948	0.92[EUR][1000 genomes]
rs62366313	0.92[EUR][1000 genomes]
rs62366742	0.89[EUR][1000 genomes]
rs62366744	0.92[EUR][1000 genomes]
rs6874208	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs6887808	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs6889264	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs7706339	0.92[EUR][1000 genomes]
rs9784640	0.89[EUR][1000 genomes]
rs9885152	0.92[EUR][1000 genomes]
rs9885514	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2762520	chr5:57557770-57578659	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57570200-57575800	Weak transcription	HMEC	breast
2	chr5:57570200-57577000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:57570400-57574800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:57570400-57575000	Weak transcription	HUVEC	blood vessel
5	chr5:57570400-57575000	Weak transcription	NHEK	skin
6	chr5:57570600-57575000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links