Variant report
Variant | rs62370955 |
---|---|
Chromosome Location | chr5:42837305-42837306 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1035516 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs1046068 | 0.86[EUR][1000 genomes] |
rs10462041 | 0.94[EUR][1000 genomes] |
rs1074263 | 0.86[ASN][1000 genomes] |
rs10941587 | 0.95[EUR][1000 genomes] |
rs10941591 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10941592 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10941593 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs11952526 | 0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs11958761 | 0.81[AMR][1000 genomes] |
rs12054838 | 0.90[EUR][1000 genomes] |
rs12055087 | 0.84[EUR][1000 genomes] |
rs12055266 | 0.95[EUR][1000 genomes] |
rs12516157 | 0.84[EUR][1000 genomes] |
rs12516954 | 0.83[AFR][1000 genomes];0.92[EUR][1000 genomes] |
rs12517008 | 0.91[ASN][1000 genomes] |
rs12517112 | 0.85[EUR][1000 genomes] |
rs12518414 | 0.89[EUR][1000 genomes] |
rs12519443 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs12519532 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12521615 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12522458 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs13167366 | 0.88[ASN][1000 genomes] |
rs13178745 | 0.97[EUR][1000 genomes] |
rs1345824 | 0.84[ASN][1000 genomes] |
rs1345825 | 0.85[ASN][1000 genomes] |
rs1364024 | 0.88[EUR][1000 genomes] |
rs1364026 | 0.84[EUR][1000 genomes] |
rs1364027 | 0.94[EUR][1000 genomes] |
rs1423653 | 0.86[ASN][1000 genomes] |
rs1423654 | 0.84[EUR][1000 genomes] |
rs1423656 | 0.80[ASN][1000 genomes] |
rs1593070 | 0.84[EUR][1000 genomes] |
rs1593071 | 0.86[ASN][1000 genomes] |
rs1862628 | 0.82[ASN][1000 genomes] |
rs1862629 | 0.88[ASN][1000 genomes] |
rs1895457 | 0.86[ASN][1000 genomes] |
rs2014958 | 0.86[ASN][1000 genomes] |
rs2113086 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs2113088 | 0.86[ASN][1000 genomes] |
rs2161600 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs230807 | 0.86[ASN][1000 genomes] |
rs230812 | 0.87[ASN][1000 genomes] |
rs230813 | 0.87[ASN][1000 genomes] |
rs230814 | 0.86[ASN][1000 genomes] |
rs230816 | 0.87[ASN][1000 genomes] |
rs230819 | 0.87[ASN][1000 genomes] |
rs230820 | 0.86[ASN][1000 genomes] |
rs2459629 | 0.86[ASN][1000 genomes] |
rs28919269 | 0.86[EUR][1000 genomes] |
rs28919892 | 0.84[EUR][1000 genomes] |
rs28919916 | 0.86[EUR][1000 genomes] |
rs2910851 | 0.86[ASN][1000 genomes] |
rs2910855 | 0.86[ASN][1000 genomes] |
rs2910856 | 0.86[ASN][1000 genomes] |
rs2910862 | 0.86[ASN][1000 genomes] |
rs2910864 | 0.86[ASN][1000 genomes] |
rs2910871 | 0.85[ASN][1000 genomes] |
rs2910880 | 0.88[ASN][1000 genomes] |
rs2910881 | 0.85[ASN][1000 genomes] |
rs2972756 | 0.88[ASN][1000 genomes] |
rs2972757 | 0.87[ASN][1000 genomes] |
rs2972758 | 0.85[ASN][1000 genomes] |
rs2972759 | 0.88[ASN][1000 genomes] |
rs2972761 | 0.88[ASN][1000 genomes] |
rs2972763 | 0.87[ASN][1000 genomes] |
rs2972767 | 0.86[ASN][1000 genomes] |
rs2972783 | 0.86[ASN][1000 genomes] |
rs2972998 | 0.86[ASN][1000 genomes] |
rs2972999 | 0.86[ASN][1000 genomes] |
rs2973000 | 0.86[ASN][1000 genomes] |
rs2973001 | 0.86[ASN][1000 genomes] |
rs2973006 | 0.86[ASN][1000 genomes] |
rs2973011 | 0.86[ASN][1000 genomes] |
rs2973018 | 0.84[ASN][1000 genomes] |
rs2973023 | 0.84[ASN][1000 genomes] |
rs2973028 | 0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2973029 | 0.86[ASN][1000 genomes] |
rs34443829 | 0.98[ASN][1000 genomes] |
rs34926728 | 0.96[ASN][1000 genomes] |
rs35293842 | 0.91[ASN][1000 genomes] |
rs3797310 | 0.83[EUR][1000 genomes] |
rs3797311 | 0.83[EUR][1000 genomes] |
rs3866438 | 0.84[EUR][1000 genomes] |
rs3870358 | 0.84[EUR][1000 genomes] |
rs3870359 | 0.84[EUR][1000 genomes] |
rs3906418 | 0.95[EUR][1000 genomes] |
rs4143864 | 0.86[EUR][1000 genomes] |
rs4866798 | 0.84[EUR][1000 genomes] |
rs4866799 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs4866800 | 0.89[ASN][1000 genomes] |
rs4866801 | 0.90[ASN][1000 genomes] |
rs4866802 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4866958 | 0.84[EUR][1000 genomes] |
rs4866959 | 0.84[EUR][1000 genomes] |
rs4866961 | 0.95[EUR][1000 genomes] |
rs4866962 | 0.84[EUR][1000 genomes] |
rs4866963 | 0.84[EUR][1000 genomes] |
rs4866966 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs4866967 | 0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs55651065 | 0.95[EUR][1000 genomes] |
rs55660133 | 0.89[EUR][1000 genomes] |
rs55687632 | 0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs55688895 | 0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs56273800 | 0.84[EUR][1000 genomes] |
rs56394865 | 0.95[EUR][1000 genomes] |
rs58429632 | 0.84[EUR][1000 genomes] |
rs59184964 | 0.87[EUR][1000 genomes] |
rs60008560 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs6180 | 0.81[ASN][1000 genomes] |
rs62370911 | 0.84[EUR][1000 genomes] |
rs62370912 | 0.84[AFR][1000 genomes];0.82[EUR][1000 genomes] |
rs62370950 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs62370951 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs62370952 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs62370953 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs6865453 | 0.95[EUR][1000 genomes] |
rs6882333 | 0.88[ASN][1000 genomes] |
rs6899268 | 0.84[EUR][1000 genomes] |
rs719756 | 0.84[ASN][1000 genomes] |
rs7579 | 0.86[EUR][1000 genomes] |
rs7708337 | 0.83[EUR][1000 genomes] |
rs7725961 | 0.89[EUR][1000 genomes] |
rs7734918 | 0.95[EUR][1000 genomes] |
rs8180394 | 0.84[EUR][1000 genomes] |
rs8180482 | 0.95[EUR][1000 genomes] |
rs9637794 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv933208 | chr5:41879946-42876624 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 112 gene(s) | inside rSNPs | diseases |
2 | nsv492147 | chr5:41902086-42896162 | Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 113 gene(s) | inside rSNPs | diseases |
3 | nsv1031160 | chr5:42610090-42843255 | Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
4 | nsv1019696 | chr5:42610090-42844191 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
5 | nsv597886 | chr5:42610409-42854408 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
6 | nsv993554 | chr5:42720939-43251863 | Bivalent/Poised TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 298 gene(s) | inside rSNPs | diseases |
7 | nsv462126 | chr5:42728831-43237188 | Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 297 gene(s) | inside rSNPs | diseases |
8 | nsv597925 | chr5:42728831-43237188 | Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 297 gene(s) | inside rSNPs | diseases |
9 | nsv523033 | chr5:42752037-42919685 | Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
10 | nsv965602 | chr5:42767568-42889585 | Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
11 | nsv1023741 | chr5:42768215-43348145 | Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 309 gene(s) | inside rSNPs | diseases |
12 | nsv537737 | chr5:42768215-43348145 | Genic enhancers Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 309 gene(s) | inside rSNPs | diseases |
13 | nsv534185 | chr5:42804840-43067088 | Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 165 gene(s) | inside rSNPs | diseases |
14 | nsv1018276 | chr5:42809131-42975245 | Strong transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:42829800-42840600 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
2 | chr5:42834400-42839200 | Weak transcription | Liver | Liver |
3 | chr5:42836200-42840000 | Weak transcription | HepG2 | liver |