Variant report

Variant rs12516157
Chromosome Location chr5:42810707-42810708
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:79 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:42789600-42813400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr5:42791400-42811200 Weak transcription Fetal Thymus thymus
3 chr5:42797400-42810800 Weak transcription Primary hematopoietic stem cells blood
4 chr5:42798200-42811200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
5 chr5:42799000-42811600 Weak transcription HSMMtube muscle
6 chr5:42799600-42811400 Weak transcription Fetal Brain Female brain
7 chr5:42799600-42812000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr5:42800600-42811200 Weak transcription Small Intestine intestine
9 chr5:42802000-42811000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
10 chr5:42802000-42811200 Weak transcription Spleen Spleen
11 chr5:42802400-42810800 Weak transcription HUES6 Cell Line embryonic stem cell
12 chr5:42803800-42810800 Weak transcription Fetal Brain Male brain
13 chr5:42804800-42811200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr5:42807200-42810800 Weak transcription H1 Cell Line embryonic stem cell
15 chr5:42807600-42812600 Active TSS Rectal Mucosa Donor 29 rectum
16 chr5:42807800-42812800 Active TSS Right Atrium heart
17 chr5:42808000-42812600 Active TSS Brain Inferior Temporal Lobe brain
18 chr5:42808200-42811000 Weak transcription iPS-15b Cell Line embryonic stem cell
19 chr5:42808200-42812200 Active TSS Duodenum Mucosa Duodenum
20 chr5:42808200-42812600 Active TSS Colonic Mucosa Colon
21 chr5:42808400-42810800 Weak transcription Osteobl bone
22 chr5:42808400-42811600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr5:42808400-42812400 Active TSS Brain Cingulate Gyrus brain
24 chr5:42808400-42812400 Active TSS Brain Substantia Nigra brain
25 chr5:42808400-42812400 Active TSS Placenta Placenta
26 chr5:42808400-42812600 Active TSS Brain Dorsolateral Prefrontal Cortex brain
27 chr5:42808400-42812600 Active TSS Ovary ovary
28 chr5:42808400-42812600 Active TSS Skeletal Muscle Female skeletal muscle
29 chr5:42808600-42810800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
30 chr5:42808600-42810800 Weak transcription Sigmoid Colon Sigmoid Colon
31 chr5:42808600-42810800 Weak transcription Stomach Mucosa stomach
32 chr5:42808600-42811400 Active TSS Rectal Mucosa Donor 31 rectum
33 chr5:42808600-42811800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr5:42808600-42812400 Active TSS Liver Liver
35 chr5:42808600-42812400 Active TSS Duodenum Smooth Muscle Duodenum
36 chr5:42808600-42812600 Active TSS Psoas Muscle Psoas
37 chr5:42808800-42812200 Active TSS Colon Smooth Muscle Colon
38 chr5:42809000-42812400 Active TSS Fetal Intestine Small intestine
39 chr5:42809000-42812400 Active TSS Right Ventricle heart
40 chr5:42809200-42812600 Active TSS Pancreatic Islets Pancreatic Islet
41 chr5:42809200-42812600 Active TSS Stomach Smooth Muscle stomach
42 chr5:42809400-42812400 Active TSS Breast Myoepithelial Primary Cells Breast
43 chr5:42809400-42812600 Active TSS Fetal Stomach stomach
44 chr5:42809400-42812800 Active TSS Brain Angular Gyrus brain
45 chr5:42809600-42810800 Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr5:42809600-42810800 Active TSS HepG2 liver
47 chr5:42809600-42811000 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr5:42809600-42812000 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
49 chr5:42809600-42812400 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr5:42809600-42812400 Active TSS Fetal Muscle Leg muscle

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