Variant report

Variant	rs62372042
Chromosome Location	chr5:42674475-42674476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs1035516	0.82[EUR][1000 genomes]
rs1046068	0.83[EUR][1000 genomes]
rs10462041	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10941585	0.90[EUR][1000 genomes]
rs10941586	0.88[EUR][1000 genomes]
rs10941587	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10941592	0.81[EUR][1000 genomes]
rs10941593	0.81[EUR][1000 genomes]
rs11952526	0.83[EUR][1000 genomes]
rs11953691	0.88[EUR][1000 genomes]
rs11957181	0.88[EUR][1000 genomes]
rs12054838	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12055087	0.84[EUR][1000 genomes]
rs12055266	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12187466	0.88[EUR][1000 genomes]
rs12187996	0.90[EUR][1000 genomes]
rs12516157	0.81[EUR][1000 genomes]
rs12517112	0.82[EUR][1000 genomes]
rs12518414	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12519443	0.83[EUR][1000 genomes]
rs12519532	0.81[EUR][1000 genomes]
rs12521615	0.81[EUR][1000 genomes]
rs12522458	0.82[EUR][1000 genomes]
rs13178745	0.83[EUR][1000 genomes]
rs1345825	0.88[EUR][1000 genomes]
rs1364024	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1364026	0.84[EUR][1000 genomes]
rs1364027	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1423654	0.84[EUR][1000 genomes]
rs1593070	0.84[EUR][1000 genomes]
rs17231271	0.90[EUR][1000 genomes]
rs1862628	0.88[EUR][1000 genomes]
rs2113086	0.80[EUR][1000 genomes]
rs2161600	0.83[EUR][1000 genomes]
rs28919269	0.83[EUR][1000 genomes]
rs28919892	0.82[EUR][1000 genomes]
rs28919916	0.83[EUR][1000 genomes]
rs2910871	0.88[EUR][1000 genomes]
rs2973028	0.87[EUR][1000 genomes]
rs3797310	0.85[EUR][1000 genomes]
rs3797311	0.85[EUR][1000 genomes]
rs3866438	0.84[EUR][1000 genomes]
rs3870358	0.84[EUR][1000 genomes]
rs3870359	0.84[EUR][1000 genomes]
rs3906418	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4143864	0.83[EUR][1000 genomes]
rs4242120	0.88[EUR][1000 genomes]
rs4242121	0.88[EUR][1000 genomes]
rs4866794	0.87[EUR][1000 genomes]
rs4866797	0.88[EUR][1000 genomes]
rs4866798	0.84[EUR][1000 genomes]
rs4866799	0.83[EUR][1000 genomes]
rs4866802	0.81[EUR][1000 genomes]
rs4866949	0.90[EUR][1000 genomes]
rs4866952	0.87[EUR][1000 genomes]
rs4866954	0.88[EUR][1000 genomes]
rs4866958	0.84[EUR][1000 genomes]
rs4866959	0.84[EUR][1000 genomes]
rs4866961	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4866962	0.84[EUR][1000 genomes]
rs4866963	0.84[EUR][1000 genomes]
rs4866966	0.83[EUR][1000 genomes]
rs4866967	0.83[EUR][1000 genomes]
rs55651065	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55660133	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55687632	0.83[EUR][1000 genomes]
rs55688895	0.83[EUR][1000 genomes]
rs55801363	0.90[EUR][1000 genomes]
rs55881749	0.90[EUR][1000 genomes]
rs55928305	0.90[EUR][1000 genomes]
rs56273800	0.84[EUR][1000 genomes]
rs56300261	0.90[EUR][1000 genomes]
rs56394865	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56848171	0.88[EUR][1000 genomes]
rs58429632	0.84[EUR][1000 genomes]
rs59184964	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60008560	0.83[EUR][1000 genomes]
rs62370873	0.88[EUR][1000 genomes]
rs62370874	0.88[EUR][1000 genomes]
rs62370911	0.84[EUR][1000 genomes]
rs62370950	0.80[EUR][1000 genomes]
rs62370951	0.81[EUR][1000 genomes]
rs62370953	0.81[EUR][1000 genomes]
rs62373001	0.90[EUR][1000 genomes]
rs62373002	0.90[EUR][1000 genomes]
rs6865453	0.81[EUR][1000 genomes]
rs6899268	0.84[EUR][1000 genomes]
rs722678	0.88[EUR][1000 genomes]
rs7579	0.83[EUR][1000 genomes]
rs7708223	0.90[EUR][1000 genomes]
rs7708337	0.82[EUR][1000 genomes]
rs7725776	0.90[EUR][1000 genomes]
rs7725961	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7734918	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8180394	0.84[EUR][1000 genomes]
rs8180482	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9637794	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1020464	chr5:42488628-42699394	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1018751	chr5:42491883-42697923	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1031160	chr5:42610090-42843255	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1019696	chr5:42610090-42844191	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv597886	chr5:42610409-42854408	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1029933	chr5:42611976-42833385	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv537735	chr5:42611976-42833385	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1019648	chr5:42616487-42696943	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv537736	chr5:42616487-42696943	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42670800-42682200	Weak transcription	Fetal Lung	lung
2	chr5:42671800-42675800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr5:42672600-42680000	Weak transcription	Liver	Liver
4	chr5:42673600-42676800	Weak transcription	Left Ventricle	heart
5	chr5:42673600-42679800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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