Variant report

Variant	rs62371215
Chromosome Location	chr5:114968240-114968241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:114965121..114972183-chr5:115175398..115178697,8	MCF-7	breast:
2	chr5:114960793..114963745-chr5:114966203..114968929,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177879	Chromatin interaction
ENSG00000251201	Chromatin interaction
ENSG00000134970	Chromatin interaction
ENSG00000145782	Chromatin interaction
ENSG00000243414	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10055677	0.81[ASN][1000 genomes]
rs256941	0.83[ASN][1000 genomes]
rs256942	0.83[ASN][1000 genomes]
rs256947	0.81[ASN][1000 genomes]
rs256948	0.81[ASN][1000 genomes]
rs256949	0.80[ASN][1000 genomes]
rs256950	0.81[ASN][1000 genomes]
rs256951	0.81[ASN][1000 genomes]
rs256952	0.81[ASN][1000 genomes]
rs256953	0.81[ASN][1000 genomes]
rs256954	0.81[ASN][1000 genomes]
rs256962	0.82[ASN][1000 genomes]
rs377290	0.82[ASN][1000 genomes]
rs400570	0.82[ASN][1000 genomes]
rs416234	0.82[ASN][1000 genomes]
rs424434	0.82[ASN][1000 genomes]
rs698366	0.82[ASN][1000 genomes]
rs698367	0.83[ASN][1000 genomes]
rs712550	0.82[ASN][1000 genomes]
rs712551	0.82[ASN][1000 genomes]
rs7702283	0.81[ASN][1000 genomes]
rs7702869	0.80[ASN][1000 genomes]
rs7702881	0.80[ASN][1000 genomes]
rs790824	0.82[ASN][1000 genomes]
rs790825	0.83[ASN][1000 genomes]
rs9326969	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114962400-114971800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:114962600-114968400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:114962600-114968400	Weak transcription	Liver	Liver
4	chr5:114962600-114968600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:114962600-114968600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:114962600-114969000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:114962600-114969600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:114962600-114969800	Weak transcription	HUVEC	blood vessel
9	chr5:114962600-114969800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr5:114962600-114970000	Weak transcription	Fetal Intestine Small	intestine
11	chr5:114962800-114970000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr5:114963000-114969800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr5:114963000-114969800	Weak transcription	NHDF-Ad	bronchial
14	chr5:114963000-114970000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr5:114963000-114970000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr5:114963200-114969800	Weak transcription	Primary T cells from cord blood	blood
17	chr5:114963200-114970000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:114963200-114970000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr5:114963400-114969000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:114963400-114969800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr5:114963400-114970000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr5:114963400-114970000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr5:114965400-114969200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr5:114966200-114970000	Weak transcription	K562	blood
25	chr5:114967200-114969000	Weak transcription	HepG2	liver
26	chr5:114967400-114969000	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr5:114967400-114969600	Weak transcription	NHLF	lung
28	chr5:114967400-114969800	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr5:114967600-114968400	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr5:114967600-114968400	Weak transcription	Fetal Lung	lung
31	chr5:114967600-114968600	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr5:114967600-114969800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr5:114967800-114969000	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr5:114967800-114969800	Weak transcription	HMEC	breast
35	chr5:114967800-114970000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr5:114968200-114969000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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