Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs55682415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55739224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55786975	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56119297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56156250	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373301	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373303	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62373304	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373317	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373322	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72778785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72778787	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72778796	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72781129	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72781131	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124593200-124609200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:124599600-124608600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:124599600-124608600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:124599800-124613400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:124600200-124603400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:124603000-124603800	Enhancers	Stomach Mucosa	stomach

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