Variant report

Variant	rs62376774
Chromosome Location	chr5:108534926-108534927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs62376771	0.84[EUR][1000 genomes]
rs62376772	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62376775	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62376777	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62376778	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62376811	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62376812	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62376814	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72793018	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72798583	0.84[EUR][1000 genomes]
rs72800009	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv2756048	chr5:108448101-108542101	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1792067	chr5:108521224-108542526	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv599338	chr5:108528729-108675737	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108481600-108535000	Weak transcription	Left Ventricle	heart
2	chr5:108503600-108540400	Weak transcription	Psoas Muscle	Psoas
3	chr5:108505000-108535200	Weak transcription	Pancreas	Pancrea
4	chr5:108522600-108538000	Weak transcription	Aorta	Aorta
5	chr5:108524800-108535200	Weak transcription	Fetal Brain Male	brain
6	chr5:108525200-108535200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr5:108527400-108535000	Weak transcription	HSMMtube	muscle
8	chr5:108527800-108542800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:108532200-108540600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:108532800-108535600	Weak transcription	NHDF-Ad	bronchial
11	chr5:108534400-108535400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr5:108534600-108535000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:108534600-108536200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:108534800-108535000	Enhancers	Fetal Lung	lung
15	chr5:108534800-108535400	Enhancers	Fetal Stomach	stomach
16	chr5:108534800-108536000	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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