Variant report

Variant	rs62376812
Chromosome Location	chr5:108554428-108554429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs4957801	0.85[AFR][1000 genomes]
rs4957806	0.81[AFR][1000 genomes]
rs62376771	0.82[EUR][1000 genomes]
rs62376772	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62376774	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62376775	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62376777	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62376778	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62376811	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62376814	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6894369	0.85[AFR][1000 genomes]
rs72793018	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72798583	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72800009	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv599338	chr5:108528729-108675737	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv17811	chr5:108537620-108555452	ZNF genes & repeats Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108554400-108555000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:108554400-108555400	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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