Variant report

Variant	rs62378484
Chromosome Location	chr5:96789743-96789744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10035513	0.83[EUR][1000 genomes]
rs10035565	0.86[EUR][1000 genomes]
rs10051764	0.89[EUR][1000 genomes]
rs10054076	0.83[EUR][1000 genomes]
rs10054816	0.83[EUR][1000 genomes]
rs10055299	0.83[EUR][1000 genomes]
rs10061167	0.89[EUR][1000 genomes]
rs10063468	0.89[EUR][1000 genomes]
rs10069958	0.83[EUR][1000 genomes]
rs10075933	0.83[EUR][1000 genomes]
rs12332533	0.94[EUR][1000 genomes]
rs13354008	0.80[EUR][1000 genomes]
rs13354043	0.80[EUR][1000 genomes]
rs13354523	0.80[EUR][1000 genomes]
rs13360631	0.80[EUR][1000 genomes]
rs13361168	0.83[EUR][1000 genomes]
rs17087492	0.83[EUR][1000 genomes]
rs17087493	0.83[EUR][1000 genomes]
rs17087516	0.83[EUR][1000 genomes]
rs28385871	0.83[EUR][1000 genomes]
rs28750798	0.83[EUR][1000 genomes]
rs28800648	0.83[EUR][1000 genomes]
rs28837479	0.83[EUR][1000 genomes]
rs62377268	0.83[EUR][1000 genomes]
rs62377269	0.83[EUR][1000 genomes]
rs62377297	0.83[EUR][1000 genomes]
rs62377298	0.83[EUR][1000 genomes]
rs62377304	0.83[EUR][1000 genomes]
rs62377305	0.83[EUR][1000 genomes]
rs62377306	0.83[EUR][1000 genomes]
rs62377307	0.83[EUR][1000 genomes]
rs62377308	0.83[EUR][1000 genomes]
rs62377309	0.83[EUR][1000 genomes]
rs62377311	0.83[EUR][1000 genomes]
rs62377347	0.83[EUR][1000 genomes]
rs62377348	0.83[EUR][1000 genomes]
rs62377349	0.83[EUR][1000 genomes]
rs62377350	0.83[EUR][1000 genomes]
rs62377351	0.83[EUR][1000 genomes]
rs62377352	0.83[EUR][1000 genomes]
rs62377353	0.83[EUR][1000 genomes]
rs62377354	0.83[EUR][1000 genomes]
rs62377355	0.83[EUR][1000 genomes]
rs62377356	0.83[EUR][1000 genomes]
rs62377357	0.83[EUR][1000 genomes]
rs62377359	0.89[EUR][1000 genomes]
rs62378462	0.89[EUR][1000 genomes]
rs62378463	0.89[EUR][1000 genomes]
rs6875798	0.89[EUR][1000 genomes]
rs6877080	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6879548	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6884708	0.89[EUR][1000 genomes]
rs6886219	0.86[EUR][1000 genomes]
rs6888385	0.83[EUR][1000 genomes]
rs7714487	0.83[EUR][1000 genomes]
rs7721324	0.89[EUR][1000 genomes]
rs7722625	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1019790	chr5:96471680-96980633	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv537812	chr5:96471680-96980633	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv534326	chr5:96531217-97283481	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv882394	chr5:96538585-97108559	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1032548	chr5:96565121-97046804	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv537813	chr5:96565121-97046804	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1025654	chr5:96613448-96817528	ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv882395	chr5:96756689-96849023	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1022046	chr5:96757900-97046804	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv1031429	chr5:96777286-97269498	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv527650	chr5:96783726-97260358	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96787800-96789800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:96787800-96790000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:96787800-96790000	Enhancers	Brain Hippocampus Middle	brain
4	chr5:96787800-96790200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr5:96788000-96789800	Enhancers	Brain Substantia Nigra	brain
6	chr5:96788000-96790000	Enhancers	Brain Cingulate Gyrus	brain
7	chr5:96788000-96790600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:96788400-96790000	Enhancers	Brain Germinal Matrix	brain
9	chr5:96788800-96789800	Enhancers	Brain Inferior Temporal Lobe	brain

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