Variant report

Variant	rs62380094
Chromosome Location	chr5:116791817-116791818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62380096	0.80[AMR][1000 genomes]
rs7726548	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882756	chr5:116783660-116905052	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116790400-116792000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr5:116790600-116792000	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr5:116790600-116792000	Active TSS	Rectal Mucosa Donor 31	rectum
4	chr5:116791000-116797800	Weak transcription	Brain Substantia Nigra	brain
5	chr5:116791400-116792000	Flanking Active TSS	Pancreas	Pancrea
6	chr5:116791600-116792000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr5:116791600-116792000	Enhancers	Placenta	Placenta
8	chr5:116791600-116797000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:116791800-116792000	Enhancers	Fetal Intestine Large	intestine
10	chr5:116791800-116792000	Enhancers	Fetal Intestine Small	intestine
11	chr5:116791800-116799400	Weak transcription	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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