Variant report

Variant	rs62382761
Chromosome Location	chr5:166981684-166981685
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:166981503..166983350-chr5:166984974..166987761,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10053050	1.00[AMR][1000 genomes]
rs28538319	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:166974400-166982000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:166977400-166982200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:166977400-166983400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:166977600-166982400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:166977600-166982400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:166977600-166982600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:166977600-166982600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr5:166977600-166988400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr5:166977800-166981800	Weak transcription	Fetal Brain Male	brain
10	chr5:166977800-166989000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr5:166978000-166987400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr5:166978600-166983000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr5:166978800-166983800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:166978800-166984000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:166979400-166983000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:166980600-166983600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:166981000-166982400	Weak transcription	Brain Germinal Matrix	brain
18	chr5:166981200-166982400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr5:166981400-166982000	Enhancers	Fetal Brain Female	brain
20	chr5:166981600-166981800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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