Variant report

Variant	rs10053050
Chromosome Location	chr5:167033283-167033284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10035359	0.84[YRI][hapmap]
rs10041625	0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs10045114	0.87[YRI][hapmap];0.88[AFR][1000 genomes]
rs10051918	0.91[YRI][hapmap]
rs10052061	0.88[AFR][1000 genomes]
rs10054877	0.92[YRI][hapmap]
rs10065886	0.90[AFR][1000 genomes]
rs10475520	0.92[YRI][hapmap]
rs12716235	0.88[AFR][1000 genomes]
rs13357319	0.92[YRI][hapmap]
rs28538319	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62382761	1.00[AMR][1000 genomes]
rs73382905	0.92[AFR][1000 genomes]
rs73382930	0.92[AFR][1000 genomes]
rs73382941	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167019400-167036600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:167023400-167034000	Weak transcription	Fetal Lung	lung
3	chr5:167023400-167048400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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