Variant report

Variant	rs10065886
Chromosome Location	chr5:167002135-167002136
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10041625	0.98[AFR][1000 genomes]
rs10045114	0.89[AFR][1000 genomes]
rs10051918	0.88[AFR][1000 genomes]
rs10052061	0.89[AFR][1000 genomes]
rs10053050	0.90[AFR][1000 genomes]
rs10475520	0.88[AFR][1000 genomes]
rs12716235	0.89[AFR][1000 genomes]
rs13357319	0.82[AFR][1000 genomes]
rs28538319	0.92[AFR][1000 genomes]
rs73382905	0.90[AFR][1000 genomes]
rs73382930	0.89[AFR][1000 genomes]
rs73382941	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167000000-167002600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr5:167000200-167002200	Active TSS	HSMM	muscle
3	chr5:167000400-167002800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr5:167000400-167003000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:167000600-167002200	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr5:167000600-167002400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:167000600-167003200	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr5:167000800-167003200	Active TSS	Brain Anterior Caudate	brain
9	chr5:167001200-167003000	Bivalent/Poised TSS	Fetal Brain Male	brain
10	chr5:167001400-167002200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr5:167001400-167003200	Bivalent/Poised TSS	Fetal Brain Female	brain
12	chr5:167001600-167002200	Bivalent/Poised TSS	NH-A	brain
13	chr5:167001600-167004800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr5:167001800-167002400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:167001800-167003800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:167001800-167004000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr5:167001800-167004000	Weak transcription	HSMMtube	muscle
18	chr5:167002000-167002200	Active TSS	H1 Cell Line	embryonic stem cell
19	chr5:167002000-167002200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:167002000-167002200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
21	chr5:167002000-167002400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
22	chr5:167002000-167002600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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