Variant report

Variant	rs13357319
Chromosome Location	chr5:166988395-166988396
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10040492	0.84[YRI][hapmap]
rs10041625	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs10045114	1.00[YRI][hapmap]
rs10051918	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs10053050	0.92[YRI][hapmap]
rs10054877	1.00[YRI][hapmap]
rs10065886	0.82[AFR][1000 genomes]
rs10475520	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs73382905	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:166977600-166988400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:166977800-166989000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:166981800-166988600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:166987000-166989200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:166987200-166991200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:166987400-166989400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr5:166987600-166988600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr5:166987800-166989200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:166988000-166988600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr5:166988000-166989200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:166988000-166989200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr5:166988000-166989600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:166988200-166988800	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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