Variant report

Variant	rs10045114
Chromosome Location	chr5:167049815-167049816
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10041625	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs10051918	1.00[YRI][hapmap]
rs10052061	1.00[AFR][1000 genomes]
rs10053050	0.87[YRI][hapmap];0.88[AFR][1000 genomes]
rs10054877	1.00[YRI][hapmap]
rs10065886	0.89[AFR][1000 genomes]
rs10475520	1.00[YRI][hapmap]
rs12716235	1.00[AFR][1000 genomes]
rs13357319	1.00[YRI][hapmap]
rs28538319	0.90[AFR][1000 genomes]
rs73382905	0.88[AFR][1000 genomes]
rs73382930	0.96[AFR][1000 genomes]
rs73382941	1.00[AFR][1000 genomes]
rs9313383	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167042200-167053200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:167047800-167059600	Weak transcription	HSMM	muscle
3	chr5:167048600-167050200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:167048800-167050000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:167048800-167053600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:167049600-167050200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:167049600-167050200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:167049600-167050600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:167049800-167050000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:167049800-167050000	Flanking Active TSS	Fetal Lung	lung
11	chr5:167049800-167050200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:167049800-167050600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:167049800-167050600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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