Variant report

Variant	rs73382941
Chromosome Location	chr5:167046699-167046700
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10041625	0.92[AFR][1000 genomes]
rs10045114	1.00[AFR][1000 genomes]
rs10052061	1.00[AFR][1000 genomes]
rs10053050	0.88[AFR][1000 genomes]
rs10065886	0.89[AFR][1000 genomes]
rs12716235	1.00[AFR][1000 genomes]
rs28538319	0.90[AFR][1000 genomes]
rs73382905	0.88[AFR][1000 genomes]
rs73382930	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167023400-167048400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:167042000-167047000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:167042000-167047200	Weak transcription	HSMM	muscle
4	chr5:167042200-167053200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:167042400-167046800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:167044200-167048800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:167044800-167047400	Weak transcription	Fetal Lung	lung
8	chr5:167045000-167047200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr5:167046600-167047800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links