Variant report

Variant	rs10041625
Chromosome Location	chr5:167003272-167003273
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10040492	0.84[YRI][hapmap]
rs10045114	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs10051918	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10052061	0.92[AFR][1000 genomes]
rs10053050	0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs10054877	1.00[YRI][hapmap]
rs10065886	0.98[AFR][1000 genomes]
rs10475520	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs12716235	0.92[AFR][1000 genomes]
rs13357319	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs28538319	0.90[AFR][1000 genomes]
rs73382905	0.88[AFR][1000 genomes]
rs73382930	0.92[AFR][1000 genomes]
rs73382941	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167001600-167004800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:167001800-167003800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:167001800-167004000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr5:167001800-167004000	Weak transcription	HSMMtube	muscle
5	chr5:167002200-167004600	Active TSS	NH-A	brain
6	chr5:167002400-167004600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:167002600-167004200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:167002800-167004000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr5:167002800-167004000	Enhancers	HSMM	muscle
10	chr5:167002800-167006600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:167003000-167003400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:167003000-167003400	Bivalent/Poised TSS	Brain Angular Gyrus	brain
13	chr5:167003000-167003600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr5:167003000-167005200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr5:167003200-167004000	Enhancers	Fetal Lung	lung
16	chr5:167003200-167004200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr5:167003200-167005000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr5:167003200-167005000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr5:167003200-167005400	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr5:167003200-167014200	Weak transcription	Brain Inferior Temporal Lobe	brain

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