Variant report

Variant	rs10054877
Chromosome Location	chr5:167024753-167024754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10040492	0.83[YRI][hapmap]
rs10041625	1.00[YRI][hapmap]
rs10045114	1.00[YRI][hapmap]
rs10051918	1.00[YRI][hapmap]
rs10053050	0.92[YRI][hapmap]
rs10475520	1.00[YRI][hapmap]
rs13357319	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167015200-167027400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:167019400-167036600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:167021000-167029000	Weak transcription	HSMMtube	muscle
4	chr5:167021200-167027600	Weak transcription	HSMM	muscle
5	chr5:167022800-167024800	Weak transcription	Fetal Brain Female	brain
6	chr5:167023000-167028000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:167023200-167029800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:167023400-167034000	Weak transcription	Fetal Lung	lung
9	chr5:167023400-167048400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:167024600-167026800	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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