Variant report

Variant	rs10040492
Chromosome Location	chr5:167004891-167004892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10041625	0.84[YRI][hapmap]
rs10051918	0.90[YRI][hapmap]
rs10054877	0.83[YRI][hapmap]
rs10475520	0.84[YRI][hapmap]
rs13357319	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167002800-167006600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:167003000-167005200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:167003200-167005000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:167003200-167005000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:167003200-167005400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr5:167003200-167014200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr5:167003400-167005000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:167004000-167006200	Weak transcription	HSMM	muscle
9	chr5:167004200-167005400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:167004200-167005600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr5:167004200-167006600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:167004200-167009600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr5:167004400-167005200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr5:167004400-167005200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:167004600-167005400	Weak transcription	NH-A	brain
16	chr5:167004600-167007800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:167004800-167005200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr5:167004800-167005200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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