Variant report

Variant	rs12716235
Chromosome Location	chr5:167044361-167044362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10041625	0.92[AFR][1000 genomes]
rs10045114	1.00[AFR][1000 genomes]
rs10052061	1.00[AFR][1000 genomes]
rs10053050	0.88[AFR][1000 genomes]
rs10065886	0.89[AFR][1000 genomes]
rs28538319	0.90[AFR][1000 genomes]
rs73382905	0.88[AFR][1000 genomes]
rs73382930	0.96[AFR][1000 genomes]
rs73382941	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167023400-167048400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:167042000-167044800	Enhancers	Fetal Lung	lung
3	chr5:167042000-167047000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:167042000-167047200	Weak transcription	HSMM	muscle
5	chr5:167042200-167053200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:167042400-167046600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:167042400-167046800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:167043000-167044600	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr5:167043800-167044400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr5:167043800-167044600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:167044000-167044800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr5:167044200-167048800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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