Variant report

Variant	rs73382905
Chromosome Location	chr5:167023383-167023384
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10041625	0.88[AFR][1000 genomes]
rs10045114	0.88[AFR][1000 genomes]
rs10052061	0.88[AFR][1000 genomes]
rs10053050	0.92[AFR][1000 genomes]
rs10065886	0.90[AFR][1000 genomes]
rs12716235	0.88[AFR][1000 genomes]
rs13357319	0.81[AFR][1000 genomes]
rs28538319	0.90[AFR][1000 genomes]
rs73382930	0.92[AFR][1000 genomes]
rs73382941	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167015200-167027400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:167019400-167036600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:167021000-167024600	Weak transcription	Fetal Brain Male	brain
4	chr5:167021000-167029000	Weak transcription	HSMMtube	muscle
5	chr5:167021200-167027600	Weak transcription	HSMM	muscle
6	chr5:167022200-167023400	Enhancers	Fetal Lung	lung
7	chr5:167022600-167023400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:167022800-167023400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:167022800-167024800	Weak transcription	Fetal Brain Female	brain
10	chr5:167023000-167028000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr5:167023200-167029800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links