Variant report

Variant	rs9313383
Chromosome Location	chr5:166983118-166983119
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10040753	0.81[AFR][1000 genomes]
rs10045114	0.82[YRI][hapmap]
rs10051918	0.82[MKK][hapmap]
rs13156620	1.00[JPT][hapmap]
rs13186467	1.00[JPT][hapmap]
rs6889487	1.00[JPT][hapmap]
rs6895048	1.00[JPT][hapmap]
rs7701318	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:166977400-166983400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:166977600-166988400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:166977800-166989000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:166978000-166987400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:166978800-166983800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:166978800-166984000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:166980600-166983600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:166981800-166988600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:166982400-166983200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr5:166982400-166983200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:166982600-166983200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr5:166983000-166984000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links