Variant report

Variant	rs10035359
Chromosome Location	chr5:167002401-167002402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10053050	0.84[YRI][hapmap]
rs10475852	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12515062	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17068860	1.00[CEU][hapmap]
rs4868802	1.00[EUR][1000 genomes]
rs58111404	1.00[EUR][1000 genomes]
rs6862511	1.00[CEU][hapmap]
rs6867682	1.00[CEU][hapmap]
rs6869063	1.00[CEU][hapmap]
rs73801291	1.00[EUR][1000 genomes]
rs7707806	1.00[CEU][hapmap]
rs7730427	1.00[CEU][hapmap]
rs7731493	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167000000-167002600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr5:167000400-167002800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr5:167000400-167003000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:167000600-167003200	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr5:167000800-167003200	Active TSS	Brain Anterior Caudate	brain
6	chr5:167001200-167003000	Bivalent/Poised TSS	Fetal Brain Male	brain
7	chr5:167001400-167003200	Bivalent/Poised TSS	Fetal Brain Female	brain
8	chr5:167001600-167004800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:167001800-167003800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:167001800-167004000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:167001800-167004000	Weak transcription	HSMMtube	muscle
12	chr5:167002000-167002600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:167002200-167002600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr5:167002200-167002600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr5:167002200-167002800	Flanking Active TSS	HSMM	muscle
16	chr5:167002200-167003000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
17	chr5:167002200-167004600	Active TSS	NH-A	brain
18	chr5:167002400-167002600	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:167002400-167002600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
20	chr5:167002400-167002600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr5:167002400-167002800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:167002400-167003200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr5:167002400-167004600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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