Variant report

Variant	rs7730427
Chromosome Location	chr5:167049472-167049473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10035359	1.00[CEU][hapmap]
rs10475852	1.00[CEU][hapmap]
rs10516033	0.87[AMR][1000 genomes]
rs12515062	1.00[CEU][hapmap]
rs17068860	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap]
rs57629844	1.00[EUR][1000 genomes]
rs59710284	1.00[EUR][1000 genomes]
rs6862511	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6867320	1.00[EUR][1000 genomes]
rs6867682	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6869063	1.00[CEU][hapmap]
rs6882356	1.00[EUR][1000 genomes]
rs6886030	1.00[EUR][1000 genomes]
rs73382909	0.81[AMR][1000 genomes]
rs73382934	0.87[AMR][1000 genomes]
rs7707806	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7731493	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167042200-167053200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:167046800-167049600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:167047800-167049600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:167047800-167059600	Weak transcription	HSMM	muscle
5	chr5:167048000-167049800	Enhancers	Fetal Lung	lung
6	chr5:167048600-167050200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:167048800-167049800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:167048800-167050000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:167048800-167053600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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