Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10035359	1.00[CEU][hapmap]
rs10454965	1.00[ASW][hapmap]
rs10475852	1.00[CEU][hapmap]
rs11134468	1.00[ASW][hapmap]
rs11134471	1.00[ASW][hapmap]
rs12515062	1.00[CEU][hapmap]
rs12520082	1.00[ASW][hapmap]
rs1459073	1.00[ASW][hapmap]
rs56270958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57147240	1.00[EUR][1000 genomes]
rs58457583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58728571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59381916	1.00[EUR][1000 genomes]
rs59710284	1.00[AMR][1000 genomes]
rs6862511	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs6867682	1.00[CEU][hapmap]
rs6869063	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73801284	1.00[AMR][1000 genomes]
rs73801291	1.00[AMR][1000 genomes]
rs73801294	1.00[EUR][1000 genomes]
rs73801296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73803903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73803913	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7707806	1.00[CEU][hapmap]
rs7730427	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap]
rs7731493	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17068860	PGAM2	trans	brain	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167042200-167053200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:167047800-167059600	Weak transcription	HSMM	muscle
3	chr5:167048800-167053600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:167050200-167056400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:167050600-167053600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:167050600-167056400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:167050800-167051800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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