Variant report

Variant	rs57147240
Chromosome Location	chr5:167056554-167056555
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17068860	1.00[EUR][1000 genomes]
rs56270958	1.00[EUR][1000 genomes]
rs58457583	1.00[EUR][1000 genomes]
rs58728571	1.00[EUR][1000 genomes]
rs59381916	1.00[EUR][1000 genomes]
rs6869063	1.00[EUR][1000 genomes]
rs73801294	1.00[EUR][1000 genomes]
rs73801296	1.00[EUR][1000 genomes]
rs73803903	1.00[EUR][1000 genomes]
rs73803913	1.00[EUR][1000 genomes]
rs7731493	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167047800-167059600	Weak transcription	HSMM	muscle
2	chr5:167053600-167058400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:167053800-167058400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:167054000-167058400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:167054400-167057800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:167055400-167057600	Enhancers	NHEK	skin
7	chr5:167056200-167057400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:167056400-167057400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:167056400-167057400	Enhancers	HMEC	breast
10	chr5:167056400-167062200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links