Variant report

Variant	rs73801296
Chromosome Location	chr5:167006250-167006251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17068860	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56270958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57147240	1.00[EUR][1000 genomes]
rs58457583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58728571	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59381916	1.00[EUR][1000 genomes]
rs59710284	1.00[AMR][1000 genomes]
rs6869063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73801284	1.00[AMR][1000 genomes]
rs73801291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73801294	1.00[EUR][1000 genomes]
rs73803903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73803913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7731493	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167002800-167006600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:167003200-167014200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr5:167004200-167006600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:167004200-167009600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:167004600-167007800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:167005200-167006800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:167005200-167007400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:167005400-167007200	Enhancers	NH-A	brain
9	chr5:167005400-167010200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr5:167006000-167006600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr5:167006200-167010800	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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