Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167014507..167015486-chr5:167474131..167475008,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10035359	1.00[CEU][hapmap]
rs10475852	1.00[CEU][hapmap]
rs12515062	1.00[CEU][hapmap]
rs17068860	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56270958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57147240	1.00[EUR][1000 genomes]
rs58457583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58728571	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59381916	1.00[EUR][1000 genomes]
rs59710284	1.00[AMR][1000 genomes]
rs6862511	1.00[CEU][hapmap]
rs6867682	1.00[CEU][hapmap]
rs73801284	1.00[AMR][1000 genomes]
rs73801291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73801294	1.00[EUR][1000 genomes]
rs73801296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73803903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73803913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7707806	1.00[CEU][hapmap]
rs7730427	1.00[CEU][hapmap]
rs7731493	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167010800-167020400	Weak transcription	HSMM	muscle
2	chr5:167010800-167022200	Weak transcription	Fetal Lung	lung
3	chr5:167015000-167015600	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr5:167015200-167018800	Weak transcription	A549	lung
5	chr5:167015200-167019200	Weak transcription	Brain Substantia Nigra	brain
6	chr5:167015200-167027400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:167015400-167018800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:167015400-167019200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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