Variant report

Variant	rs6862511
Chromosome Location	chr5:167010995-167010996
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10035359	1.00[CEU][hapmap]
rs10475852	1.00[CEU][hapmap];0.94[GIH][hapmap]
rs12515062	1.00[CEU][hapmap]
rs17068860	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs57629844	1.00[EUR][1000 genomes]
rs59710284	1.00[EUR][1000 genomes]
rs6867320	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6867682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6869063	1.00[CEU][hapmap]
rs6882356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6886030	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7707806	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7730427	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7731493	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167003200-167014200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr5:167007800-167011400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:167007800-167014200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:167010200-167015000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:167010400-167015000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:167010800-167011600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:167010800-167020400	Weak transcription	HSMM	muscle
8	chr5:167010800-167022200	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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