Variant report

Variant	rs73382934
Chromosome Location	chr5:167041703-167041704
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10516033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73382909	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73382932	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7730427	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167023400-167048400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:167041200-167042000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:167041200-167042000	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr5:167041200-167042400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:167041400-167042000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:167041400-167042000	Enhancers	HSMM	muscle
7	chr5:167041600-167042000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr5:167041600-167042000	Enhancers	Fetal Kidney	kidney
9	chr5:167041600-167042000	Flanking Active TSS	Fetal Lung	lung
10	chr5:167041600-167042200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:167041600-167042400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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