Variant report

Variant	rs62387370
Chromosome Location	chr6:13545085-13545086
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57489291	0.81[EUR][1000 genomes]
rs61401710	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62385842	0.84[EUR][1000 genomes]
rs62385845	0.88[EUR][1000 genomes]
rs62385846	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7747655	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13539400-13545800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:13543600-13545200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:13544000-13545400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:13544000-13545400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:13544200-13545200	Enhancers	H9 Cell Line	embryonic stem cell
6	chr6:13544200-13545200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:13544200-13545400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:13544200-13545400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:13544400-13545200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:13544600-13545400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:13544800-13545400	Enhancers	Liver	Liver
12	chr6:13544800-13545400	Enhancers	HepG2	liver
13	chr6:13544800-13555200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:13545000-13545200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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