Variant report

Variant	rs57489291
Chromosome Location	chr6:13508109-13508110
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs60148958	0.85[AMR][1000 genomes]
rs61401710	1.00[ASN][1000 genomes]
rs62385801	0.85[AMR][1000 genomes]
rs62385805	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62385806	0.85[AMR][1000 genomes]
rs62385809	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62385810	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62385811	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62385837	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62385842	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62385845	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62385846	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62387370	0.81[EUR][1000 genomes]
rs73372816	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7747655	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758264	0.96[EUR][1000 genomes]
rs9474418	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv462640	chr6:13426539-13519434	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv600994	chr6:13426539-13519434	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv470802	chr6:13441424-13519371	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13500200-13512600	Weak transcription	Small Intestine	intestine
2	chr6:13506000-13508600	Weak transcription	Adipose Nuclei	Adipose
3	chr6:13506000-13509400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:13506200-13508800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:13506200-13509800	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:13506200-13512400	Weak transcription	Right Atrium	heart
7	chr6:13507000-13508200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:13507000-13511200	Weak transcription	Spleen	Spleen
9	chr6:13507200-13512400	Weak transcription	Left Ventricle	heart
10	chr6:13507600-13508200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:13507600-13508200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr6:13508000-13508800	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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