Variant report

Variant	rs9474418
Chromosome Location	chr6:13524036-13524037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13523078..13528567-chr6:13572959..13576229,4	MCF-7	breast:
2	chr6:13522682..13524760-chr6:13529345..13531013,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124523	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57489291	1.00[ASN][1000 genomes]
rs61401710	1.00[ASN][1000 genomes]
rs62385837	1.00[ASN][1000 genomes]
rs62385842	1.00[ASN][1000 genomes]
rs62385845	1.00[ASN][1000 genomes]
rs62385846	1.00[ASN][1000 genomes]
rs7747655	1.00[ASN][1000 genomes]
rs9463682	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13513000-13527200	Weak transcription	Right Atrium	heart
2	chr6:13514400-13524400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:13521600-13529200	Enhancers	HUVEC	blood vessel
4	chr6:13522200-13524400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:13522800-13525000	Weak transcription	Fetal Brain Male	brain
6	chr6:13522800-13527200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:13523000-13530000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:13523400-13524200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:13523400-13524600	Weak transcription	Fetal Brain Female	brain
10	chr6:13523400-13525400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:13523400-13526800	Weak transcription	NHEK	skin
12	chr6:13523400-13527200	Weak transcription	Osteobl	bone
13	chr6:13523400-13527400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:13523600-13525600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr6:13523600-13526800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:13523800-13526200	Enhancers	Colonic Mucosa	Colon
17	chr6:13523800-13527800	Enhancers	Fetal Thymus	thymus
18	chr6:13524000-13524200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
19	chr6:13524000-13524400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr6:13524000-13524600	Weak transcription	Lung	lung
21	chr6:13524000-13524800	Enhancers	Right Ventricle	heart
22	chr6:13524000-13524800	Enhancers	Spleen	Spleen
23	chr6:13524000-13524800	Bivalent Enhancer	HepG2	liver
24	chr6:13524000-13524800	Enhancers	HSMMtube	muscle
25	chr6:13524000-13525000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:13524000-13525000	Enhancers	Fetal Muscle Leg	muscle
27	chr6:13524000-13525000	Enhancers	Left Ventricle	heart
28	chr6:13524000-13525000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr6:13524000-13525200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:13524000-13525200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:13524000-13525400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:13524000-13525400	Enhancers	Placenta	Placenta
33	chr6:13524000-13525600	Enhancers	Thymus	Thymus
34	chr6:13524000-13526200	Enhancers	Psoas Muscle	Psoas
35	chr6:13524000-13527400	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr6:13524000-13528200	Enhancers	Primary B cells from peripheral blood	blood
37	chr6:13524000-13528200	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr6:13524000-13530000	Enhancers	Primary hematopoietic stem cells	blood

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