Variant report

Variant	rs9463682
Chromosome Location	chr6:13340288-13340289
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13327503..13331011-chr6:13335452..13341378,7	MCF-7	breast:
2	chr6:13339419..13342239-chr6:13348403..13350162,2	MCF-7	breast:
3	chr6:13332960..13334786-chr6:13338319..13340429,2	K562	blood:
4	chr6:13338989..13341247-chr6:13343488..13345910,2	MCF-7	breast:
5	chr6:13340016..13342651-chr6:13343098..13344722,2	K562	blood:
6	chr6:13336598..13338225-chr6:13339265..13340766,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145979	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12178120	0.94[AFR][1000 genomes]
rs508477	1.00[CHD][hapmap]
rs9463668	0.84[AFR][1000 genomes]
rs9463694	1.00[YRI][hapmap]
rs9473967	0.84[AFR][1000 genomes]
rs9474004	1.00[AFR][1000 genomes]
rs9474418	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1028533	chr6:13239059-13484814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv538136	chr6:13239059-13484814	Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1034016	chr6:13248122-13418225	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13329200-13340400	Weak transcription	Spleen	Spleen
2	chr6:13329400-13344200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:13335600-13340400	Weak transcription	Fetal Thymus	thymus
4	chr6:13335600-13341400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:13335600-13341800	Weak transcription	Right Atrium	heart
6	chr6:13336800-13341200	Enhancers	Primary B cells from cord blood	blood
7	chr6:13336800-13341600	Enhancers	Primary B cells from peripheral blood	blood
8	chr6:13337200-13351200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:13337400-13340400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:13337400-13341800	Weak transcription	Left Ventricle	heart
11	chr6:13338800-13340400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:13338800-13341200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr6:13339000-13340400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:13339000-13340400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:13339000-13340400	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr6:13339200-13340400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:13339200-13340400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:13339600-13340400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr6:13339800-13340600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr6:13340200-13341200	Enhancers	GM12878-XiMat	blood

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