Variant report

Variant	rs62389460
Chromosome Location	chr6:13098302-13098303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13097814..13100290-chr6:13115939..13117682,2	MCF-7	breast:
2	chr6:13094526..13096309-chr6:13098089..13099829,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7775901	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13078600-13101400	Weak transcription	Lung	lung
2	chr6:13080000-13102000	Weak transcription	Fetal Brain Female	brain
3	chr6:13080000-13105200	Weak transcription	Right Atrium	heart
4	chr6:13089000-13102000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:13091000-13099000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:13091600-13099200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:13094800-13099800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:13095000-13099800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:13095000-13099800	Enhancers	Fetal Heart	heart
10	chr6:13096200-13098600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:13096200-13101800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:13096200-13103200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:13096400-13102200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr6:13096600-13098800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:13096800-13100400	Enhancers	Brain Anterior Caudate	brain
16	chr6:13097000-13098400	Enhancers	Brain Hippocampus Middle	brain
17	chr6:13097200-13106600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:13097400-13098400	Enhancers	Stomach Smooth Muscle	stomach
19	chr6:13097400-13098600	Enhancers	Brain Substantia Nigra	brain
20	chr6:13097400-13099400	Enhancers	Brain Cingulate Gyrus	brain
21	chr6:13097600-13101200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:13097800-13098400	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:13097800-13098400	Weak transcription	Fetal Kidney	kidney
24	chr6:13097800-13098400	Enhancers	Rectal Smooth Muscle	rectum
25	chr6:13097800-13099200	Enhancers	Aorta	Aorta
26	chr6:13097800-13099200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:13097800-13099800	Enhancers	Left Ventricle	heart
28	chr6:13098000-13099400	Weak transcription	Brain Angular Gyrus	brain
29	chr6:13098000-13099800	Enhancers	Right Ventricle	heart
30	chr6:13098000-13101400	Weak transcription	Pancreas	Pancrea
31	chr6:13098000-13102000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr6:13098200-13099200	Weak transcription	HSMMtube	muscle

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