Variant report

Variant	rs62391240
Chromosome Location	chr5:128162077-128162078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10058629	0.80[EUR][1000 genomes]
rs10066082	0.82[EUR][1000 genomes]
rs10071048	0.83[EUR][1000 genomes]
rs10071050	0.83[EUR][1000 genomes]
rs10478825	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17678073	0.80[EUR][1000 genomes]
rs2214369	0.82[EUR][1000 genomes]
rs28626207	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62391242	0.80[EUR][1000 genomes]
rs6860974	0.80[EUR][1000 genomes]
rs72789204	0.80[EUR][1000 genomes]
rs7707454	1.00[ASN][1000 genomes]
rs7735162	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128157600-128172400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:128158800-128162400	Enhancers	HUVEC	blood vessel
3	chr5:128160800-128162200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:128161000-128162200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:128161000-128162400	Enhancers	Hela-S3	cervix
6	chr5:128161600-128162400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:128162000-128162200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:128162000-128162200	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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