Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10038006	1.00[JPT][hapmap]
rs10055367	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10061806	0.82[EUR][1000 genomes]
rs10065480	1.00[JPT][hapmap]
rs10071939	1.00[JPT][hapmap]
rs10478825	1.00[ASN][1000 genomes]
rs10491268	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11743701	1.00[JPT][hapmap]
rs11749027	1.00[JPT][hapmap]
rs17211788	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17617241	1.00[JPT][hapmap]
rs17617329	1.00[JPT][hapmap]
rs17679250	1.00[JPT][hapmap]
rs28626207	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3851463	1.00[JPT][hapmap]
rs62391240	1.00[ASN][1000 genomes]
rs6595867	1.00[JPT][hapmap]
rs6859805	1.00[JPT][hapmap]
rs6873372	1.00[JPT][hapmap]
rs6880855	1.00[JPT][hapmap]
rs7449021	0.85[EUR][1000 genomes]
rs7707454	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7730969	1.00[JPT][hapmap]
rs7735034	1.00[JPT][hapmap]
rs9285913	1.00[JPT][hapmap]
rs9686953	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882836	chr5:127999225-128136519	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128129600-128137200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:128130200-128133000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:128132400-128133000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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