Variant report

Variant	rs10491268
Chromosome Location	chr5:128118088-128118089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10055367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10061806	0.95[EUR][1000 genomes]
rs17211788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7449021	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7707454	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7735162	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882836	chr5:127999225-128136519	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128116800-128118800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr5:128117000-128119400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:128117200-128119000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:128117400-128119000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:128117600-128118400	Enhancers	Fetal Brain Female	brain
6	chr5:128117600-128118600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:128117600-128118800	Enhancers	Brain Cingulate Gyrus	brain
8	chr5:128117600-128119000	Enhancers	Brain Anterior Caudate	brain
9	chr5:128117600-128119000	Enhancers	Brain Hippocampus Middle	brain
10	chr5:128117600-128119000	Enhancers	HUVEC	blood vessel
11	chr5:128117600-128119000	Enhancers	NH-A	brain
12	chr5:128117800-128118200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:128117800-128118200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr5:128117800-128118200	Enhancers	Rectal Smooth Muscle	rectum
15	chr5:128117800-128118400	Enhancers	Fetal Stomach	stomach
16	chr5:128117800-128118600	Enhancers	Brain Angular Gyrus	brain
17	chr5:128117800-128118800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:128117800-128118800	Enhancers	Adipose Nuclei	Adipose
19	chr5:128117800-128118800	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr5:128117800-128119000	Enhancers	Fetal Muscle Leg	muscle
21	chr5:128118000-128118400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr5:128118000-128118400	Enhancers	Fetal Lung	lung
23	chr5:128118000-128118800	Enhancers	HMEC	breast
24	chr5:128118000-128119000	Enhancers	Brain Substantia Nigra	brain
25	chr5:128118000-128119400	Enhancers	Hela-S3	cervix

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