Variant report

Variant	rs17211788
Chromosome Location	chr5:128113942-128113943
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10055367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10061806	0.94[EUR][1000 genomes]
rs10491268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7449021	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7707454	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7735162	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882836	chr5:127999225-128136519	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128109200-128114000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr5:128109800-128114000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr5:128112600-128114200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr5:128112600-128114600	Enhancers	HUVEC	blood vessel
5	chr5:128112600-128114800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr5:128112600-128115400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:128112800-128114800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:128112800-128115000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:128112800-128115400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr5:128112800-128115400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr5:128113200-128114200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:128113600-128114000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:128113600-128114200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:128113600-128114200	Enhancers	NH-A	brain
15	chr5:128113600-128114400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr5:128113600-128114600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:128113600-128114800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr5:128113600-128115000	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr5:128113800-128114200	Enhancers	H9 Cell Line	embryonic stem cell
20	chr5:128113800-128114600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links